{"id":5531,"date":"2017-07-17T14:42:16","date_gmt":"2017-07-17T14:42:16","guid":{"rendered":"http:\/\/metasub.org\/?page_id=5531"},"modified":"2021-07-20T09:48:10","modified_gmt":"2021-07-20T13:48:10","slug":"2017-conference-agenda","status":"publish","type":"page","link":"http:\/\/metasub.org\/2017-conference-agenda\/","title":{"rendered":"2017 Conference Agenda"},"content":{"rendered":"

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3rd Annual Metagenomics and Metadesign of Subways and Urban Biomes (MetaSUB) Conference<\/h1>\n

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18-19 July<\/span> – Royal Academy of Engineering Sciences, Grev Turegatan 16, Stockholm (www.iva.se)<\/h2>\n

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20 July<\/span> – Stockholm University, Svante Arrhenius v\u00e4g 20C, Stockholm (www.su.se)<\/h2>\n

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Tuesday, July 18, 2017 \u2013 Royal Academy of Engineering Sciences<\/span><\/strong><\/h2>\n

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8:00 \u2013 9:30<\/h4>\n

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Arrival at the Royal Academy of Engineering Sciences Registration & Coffee<\/strong><\/h4>\n

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9:30 \u2013 9:40<\/h4>\n

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Opening Remarks<\/strong>
\nDr. Klas Udekwu<\/a>, Associate Senior Lecturer, The Wenner-Gren Institute, Stockholm University<\/em>
\nDr. Per Ljungdahl<\/a>, Professor in the Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University<\/em><\/h4>\n

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Plenary Session I:
\nModerator: Sofia Ahsanuddin<\/h2>\n

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9:45 \u2013 10:15<\/h4>\n

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\u201cApplication of Next Generation Sequencing and Bioinformatics for Rapid and Accurate Pathogen Detection and Characterization of the Microbiome\u201d<\/strong>
\nDr. Rita Colwell, Former Director of the U.S. National Science Foundation (NSF)<\/em><\/h4>\n

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10:20 \u2013 10:50<\/h4>\n

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\u201cInto the Gowanus Canal: A Community Lab Partnership with MetaSUB\u201d<\/strong>
\nDr. Ellen Jorgensen, Co-founder and Director of Genspace, USA, Bio-hacker lab<\/em><\/h4>\n

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10:50 \u2013 11:20<\/h4>\n

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\u201cDark Matter in Urban Metagenomes\u201d<\/strong>
\nDr. Alexandra Graf, Assistant Professor, FH Campus Wien, Austria; PI for MetaSUB Vienna<\/h4>\n

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11:20 \u2013 11:50<\/h4>\n

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\u201cUnderstanding the Interactive Nature of Aquatic Microbial Communities from Genomic Data\u201d<\/strong>
\nDr. Stefan Bertilsson, Professor of Ecology and Genetics, Uppsala University, Stockholm, Sweden<\/em><\/h4>\n

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12:00 \u2013 13:00<\/h4>\n

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Lunch<\/strong><\/h4>\n

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Plenary Session II:
\nModerator: Paulina Pastuczek<\/h2>\n

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13:00 \u2013 13:30<\/h4>\n

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Arrival at the Royal Academy of Engineering Sciences Registration & Coffee<\/strong><\/h4>\n

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13:30 \u2013 14:00<\/h4>\n

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\u201cLessons and Questions About the Microbiomes of Buildings\u201d<\/strong>
\nDr. Kyle Bibby, Assistant Professor, University of Pittsburgh<\/em><\/h4>\n

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14:00 \u2013 14:30<\/h4>\n

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Sponsored Talk by Promega<\/strong><\/h4>\n

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14:30 \u2013 15:00<\/h4>\n

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Sponsored Talk by Zymo Research<\/strong><\/h4>\n

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15:00 \u2013 16:00<\/h4>\n

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Coffee and Break (Sponsor Tables & Networking Reception)<\/strong><\/h4>\n

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16:00 \u2013 17:00<\/h4>\n

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Breakout Sessions<\/strong><\/h4>\n
    \n
  • \n

    Library Methods in Metagenomics<\/h4>\n<\/li>\n
  • \n

    Sampling methods for sampling air, subways, buses, sewage systems, beaches, and rivers<\/h4>\n<\/li>\n
  • \n

    Strategies of NGS Sequencing of unique sample types<\/h4>\n<\/li>\n
  • \n

    Novel approaches to library synthesis and sequencing<\/h4>\n<\/li>\n
  • \n

    Alternative sequencing approach methods-Epigenetics and the Virome<\/h4>\n<\/li>\n
  • \n

    Validation of Metagenomics and Sequencing Data<\/h4>\n<\/li>\n<\/ul>\n

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    17:00 \u2013 17:30<\/h4>\n

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    Reports from Breakout Groups<\/strong>
    \nModerated by Dr. Klas Udekwu and Sofia Ahsanuddin<\/h4>\n

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    17:30 \u2013 17:45<\/h4>\n

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    Address by Dr. Klas Udekwu and Dr. Christopher E. Mason<\/strong>
    \nDistinguished Conference Co-Hosts; PIs for MetaSUB Stockholm and MetaSUB New York City<\/h4>\n

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    17:45<\/h4>\n

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    Depart for Dinner<\/strong><\/h4>\n

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    18:30 \u2013 22:30<\/h4>\n

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    Shrimp Cruise Dinner<\/strong><\/h4>\n

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    Wednesday, July 19, 2017 \u2013 Royal Academy of Engineering Sciences<\/strong><\/span><\/h2>\n

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    8:00 \u2013 8:30<\/h4>\n

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    \u201cPrecision Interplanetary Metagenomics\u201d<\/strong>
    \nDr. Christopher Mason, Associate Professor of Computational Biology at Weill Cornell Medicine; PI for MetaSUB New York City<\/em><\/h4>\n

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    8:30 \u2013 9:00<\/h4>\n

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    \u201cMapping the Urban Microbiome of New York City\u201d<\/strong>
    \nDr. Jane Carlton, Professor, Director, Center for Genomics and Systems Biology, New York University, USA<\/em><\/h4>\n

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    9:00 \u2013 9:30<\/h4>\n

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    \u201cBoeing Fly-Healthy Study\u201d<\/strong>
    \nDr. Howard Weiss, Professor of Mathematics, Georgia Tech, Atlanta, Georgia, USA<\/em><\/h4>\n

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    9:30 \u2013 10:00<\/h4>\n

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    Coffee and Tea Break<\/strong><\/h4>\n

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    10:00 \u2013 11:00<\/h4>\n

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    Thematic Session I (panel discussion): Metagenomics, Health Surveillance, and Antibiotic Resistance<\/strong><\/h4>\n
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    • \n

      Dr. Gaston Gonnet, Professor of Computer Science at ETH Zurich and Institut Pasteur Montevideo, Montevideo, Uruguay<\/em><\/h4>\n<\/li>\n
    • \n

      Dr. Lynn Schriml, Associate Professor of Epidemiology and Public Health at the Institute for Genome Sciences at University of Maryland School of Medicine, Baltimore, USA<\/em><\/h4>\n<\/li>\n
    • \n

      Dr. Torsten Semmler, Assistant Professor at Robert Koch Institute, Berlin, Germany<\/em><\/h4>\n<\/li>\n
    • \n

      Dr. Timothy Read, Professor of Infectious Diseases with Secondary Appointment in Human Genetics at Emory University School of Medicine, Atlanta, GA, USA<\/em><\/h4>\n<\/li>\n
    • \n

      Dr. Velavan Thirumalaisamy, Professor of Infectious Diseases at the Institute for Tropical Medicine, Universit\u00e4tsklinikum T\u00fcbingen, T\u00fcbingen, Germany<\/em><\/h4>\n<\/li>\n<\/ul>\n

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      11:00 \u2013 11:30<\/h4>\n

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      Sponsored Talk by QIAGEN<\/strong><\/h4>\n

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      11:30 \u2013 12:00<\/h4>\n

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      CAMDA MetaSUB Challenge<\/strong>
      \nDr. Pawe\u0142 \u0141abaj, Assistant Professor at Boku University, Vienna, Austria<\/em><\/h4>\n

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      12:00 \u2013 13:00<\/h4>\n

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      Lunch<\/strong><\/h4>\n

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      13:00 \u2013 14:00<\/h4>\n

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      Thematic Session II (panel discussion): Advances in Bioinformatics and Data Visualization<\/strong><\/h4>\n
        \n
      • \n

        David Danko, PhD Candidate in computational biology at Weill Cornell Medicine<\/em><\/h4>\n<\/li>\n
      • \n

        Dr. Pawel Labaj, Assistant Professor at Boku University, Vienna, Austria<\/em><\/h4>\n<\/li>\n
      • \n

        Dr. Nicolas Rascovan, Post-Doctoral Fellow at Mediterranee Infection Institute \u2013 Aix Marseille University, Marseille, France<\/em><\/h4>\n<\/li>\n
      • \n

        Dr. Hugues Richard, Assistant Professor in the Computational and Quantitative Biology Unit at University Pierre et Marie Curie, Paris, France<\/em><\/h4>\n<\/li>\n
      • \n

        Dr. Dimitar Vassilev, Associate Professor of Computer Informatics at University of Sofia, Sofia, Bulgaria<\/em><\/h4>\n<\/li>\n
      • \n

        Dr. Eran Elhaik, Professor University of Sheffield, U.K<\/em><\/h4>\n<\/li>\n<\/ul>\n

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        14:00 \u2013 14:30<\/h4>\n

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        Olympiome Updates<\/strong>
        \nDr. Emmanual Dias-Neto, Professor of medical genomics and bioinformatics at AC Camargo Center, Sao Paulo, Brazil<\/em><\/h4>\n

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        14:30 \u2013 15:00<\/h4>\n

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        Coffee and Tea Break (visit sponsors)<\/strong><\/h4>\n

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        15:00 \u2013 17:00<\/h4>\n

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        Lightening Round: City Updates<\/strong>
        \n15-minute talks on city updates and data analyses<\/h4>\n

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        17:00 \u2013 18:00<\/h4>\n

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        Data Dissemination and Access<\/strong><\/h4>\n
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          Demo of metagenscope and other tools<\/h4>\n<\/li>\n
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          Ideas for new pipelines\/methods<\/h4>\n<\/li>\n
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          SRA\/ENA\/Gates Open Access<\/h4>\n<\/li>\n<\/ul>\n

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          18:00 \u2013 18:40<\/h4>\n

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          Break, Sponsor Visits, and Networking<\/strong><\/h4>\n

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          19:00 \u2013 1:00<\/h4>\n

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          Visit to the Vasa Museum and dinner (Night at the Museum!)<\/strong><\/h4>\n

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          Thursday, July 20, 2017 – Stockholm University – open to the public<\/strong><\/span><\/h2>\n

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          8:00 \u2013 8:30<\/h4>\n

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          Coffee and Tea<\/strong><\/h4>\n

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          8:30 \u2013 9:30<\/h4>\n

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          Poster Session (highlighted posters below)<\/strong><\/h4>\n
            \n
          • \n

            Xinzhao Tong, \u201cIndividual factors and conditionally rare taxa shape the skin mycobiome dynamics over seasons\u201d<\/h4>\n<\/li>\n
          • \n

            Dr. Aspa D. Chatziefthmiou, \u201cMicrobial community structure and inter-phyla interactions exhibit distinct patterns in desert marine mats\u201d<\/h4>\n<\/li>\n
          • \n

            Andre Kahles, \u201cMetagenome Representation with Scalable Reference Graphs\u201d<\/h4>\n<\/li>\n
          • \n

            Marcus Leung et al, \u201cComposition and dynamics of the air microbiome within a zero carbon building\u201d<\/h4>\n<\/li>\n<\/ul>\n

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            9:30 \u2013 10:00<\/h4>\n

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            \u201cPrecision Medicine and Standardization in Genomics and Bioinformatics\u201d<\/strong>
            \nDr. Leming Shi, Professor of Personalized Genomics, Fudan University, China; PI for MetaSUB Shanghai<\/em><\/h4>\n

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            10:00 \u2013 11:00<\/h4>\n

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            Thematic Session III (panel discussion): Air, Land, and Sea; Challenges in Metagenomics Standardization<\/strong><\/h4>\n
              \n
            • \n

              Daniela Bezdan, Research Director of Mason Lab for Integrative Genomics, Weill Cornell Medicine, New York City, USA<\/em><\/h4>\n<\/li>\n
            • \n

              Dr. Aspa D. Chatziefthmiou, Research Scientist at Weill Cornell Medicine Doha and Founder of Richer Environments, Doha, Qatar<\/em><\/h4>\n<\/li>\n
            • \n

              Dr. Patrick Lee, Assistant Professor in the School of Energy and Environment at the City University of Hong Kong, Hong Kong, China<\/em><\/h4>\n<\/li>\n
            • \n

              Dr. Marius Dybwad, Research Scientist at the Norwegian Defense Research Establishment<\/em><\/h4>\n<\/li>\n
            • \n

              Dr. Gaston Gonnet, Professor of Computer Science at ETH Zurich and Institut Pasteur Montevideo, Montevideo, Uruguay<\/em><\/h4>\n<\/li>\n
            • \n

              Dr. Haruo Suzuki, Associate Professor, Institute for Advanced Biosciences, Keio University, Japan<\/em><\/h4>\n<\/li>\n<\/ul>\n

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              11:00 \u2013 12:00<\/h4>\n

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              Lunch<\/strong><\/h4>\n

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              12:00 \u2013 12:30<\/h4>\n

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              Sponsored Talk by Illumina<\/strong><\/h4>\n

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              12:30 \u2013 14:10<\/h4>\n

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              Highlighted Student Talks<\/strong><\/h4>\n

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              14:10 \u2013 14:40<\/h4>\n

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              Thematic Session IV (panel discussion): Metatranscriptomics and Viral RNA -Omics<\/strong><\/h4>\n
                \n
              • \n

                Dr. Emmanuel Dias-Neto, Assistant Professor of Genomics at AC Camargo Cancer Center, Sao Paulo, Brazil<\/em><\/h4>\n<\/li>\n
              • \n

                Dr. Nicolas Rascovan, Post-Doctoral Fellow at Mediterranee Infection Institute \u2013 Aix Marseille University, Marseille, France<\/em><\/h4>\n<\/li>\n
              • \n

                Dr. Christopher E. Mason, Associate Professor at Weill Cornell Medicine, New York City, USA<\/em><\/h4>\n<\/li>\n<\/ul>\n

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                14:40 \u2013 15:00<\/h4>\n

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                Coffee and Tea Break<\/strong><\/h4>\n

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                15:00 \u2013 15:15<\/h4>\n

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                Updates from The Second Annual Global City Sampling Day (GCSD 2017) and plans for gCSD18<\/strong>
                \nSofia Ahsanuddin, Executive Director of MetaSUB International Consortium<\/em><\/h4>\n

                [\/vc_column_text][\/vc_column][\/vc_row][vc_row][vc_column width=”1\/4″][vc_column_text]<\/p>\n

                15:15 \u2013 15:45<\/h4>\n

                [\/vc_column_text][\/vc_column][vc_column width=”3\/4″][vc_column_text]<\/p>\n

                H2020 Grant Thematic Session<\/strong><\/h4>\n

                [\/vc_column_text][\/vc_column][\/vc_row][vc_row][vc_column width=”1\/4″][vc_column_text]<\/p>\n

                15:45 \u2013 17:00<\/h4>\n

                [\/vc_column_text][\/vc_column][vc_column width=”3\/4″][vc_column_text]<\/p>\n

                Manuscript-planning and long-term goals to 2020<\/strong>
                \nDr. Christopher Mason, Associate Professor, Weill Cornell Medicine<\/em><\/h4>\n

                [\/vc_column_text][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"

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