3rd Annual Metagenomics and Metadesign of Subways and Urban Biomes (MetaSUB) Conference<\/h1>\n

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Plenary Session I:
\nModerator: Sofia Ahsanuddin<\/h2>\n

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9:45 \u2013 10:15<\/h4>\n

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\u201cApplication of Next Generation Sequencing and Bioinformatics for Rapid and Accurate Pathogen Detection and Characterization of the Microbiome\u201d<\/strong>
\nDr. Rita Colwell, Former Director of the U.S. National Science Foundation (NSF)<\/em><\/h4>\n

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10:20 \u2013 10:50<\/h4>\n

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\u201cInto the Gowanus Canal: A Community Lab Partnership with MetaSUB\u201d<\/strong>
\nDr. Ellen Jorgensen, Co-founder and Director of Genspace, USA, Bio-hacker lab<\/em><\/h4>\n

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10:50 \u2013 11:20<\/h4>\n

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\u201cDark Matter in Urban Metagenomes\u201d<\/strong>
\nDr. Alexandra Graf, Assistant Professor, FH Campus Wien, Austria; PI for MetaSUB Vienna<\/h4>\n

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11:20 \u2013 11:50<\/h4>\n

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\u201cUnderstanding the Interactive Nature of Aquatic Microbial Communities from Genomic Data\u201d<\/strong>
\nDr. Stefan Bertilsson, Professor of Ecology and Genetics, Uppsala University, Stockholm, Sweden<\/em><\/h4>\n

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12:00 \u2013 13:00<\/h4>\n

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Lunch<\/strong><\/h4>\n

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Plenary Session II:
\nModerator: Paulina Pastuczek<\/h2>\n

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13:00 \u2013 13:30<\/h4>\n

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Arrival at the Royal Academy of Engineering Sciences Registration & Coffee<\/strong><\/h4>\n

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13:30 \u2013 14:00<\/h4>\n

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\u201cLessons and Questions About the Microbiomes of Buildings\u201d<\/strong>
\nDr. Kyle Bibby, Assistant Professor, University of Pittsburgh<\/em><\/h4>\n

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14:00 \u2013 14:30<\/h4>\n

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Sponsored Talk by Promega<\/strong><\/h4>\n

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14:30 \u2013 15:00<\/h4>\n

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Sponsored Talk by Zymo Research<\/strong><\/h4>\n

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15:00 \u2013 16:00<\/h4>\n

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Coffee and Break (Sponsor Tables & Networking Reception)<\/strong><\/h4>\n

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16:00 \u2013 17:00<\/h4>\n

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Breakout Sessions<\/strong><\/h4>\n

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• \n

  Library Methods in Metagenomics<\/h4>\n<\/li>\n

  \n

  Sampling methods for sampling air, subways, buses, sewage systems, beaches, and rivers<\/h4>\n<\/li>\n

  \n

  Strategies of NGS Sequencing of unique sample types<\/h4>\n<\/li>\n

  \n

  Novel approaches to library synthesis and sequencing<\/h4>\n<\/li>\n

  \n

  Alternative sequencing approach methods-Epigenetics and the Virome<\/h4>\n<\/li>\n

  \n

  Validation of Metagenomics and Sequencing Data<\/h4>\n<\/li>\n<\/ul>\n

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  17:00 \u2013 17:30<\/h4>\n

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  Reports from Breakout Groups<\/strong>
  \nModerated by Dr. Klas Udekwu and Sofia Ahsanuddin<\/h4>\n

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  17:30 \u2013 17:45<\/h4>\n

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  Address by Dr. Klas Udekwu and Dr. Christopher E. Mason<\/strong>
  \nDistinguished Conference Co-Hosts; PIs for MetaSUB Stockholm and MetaSUB New York City<\/h4>\n

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  17:45<\/h4>\n

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  Depart for Dinner<\/strong><\/h4>\n

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  18:30 \u2013 22:30<\/h4>\n

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  Shrimp Cruise Dinner<\/strong><\/h4>\n

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  Wednesday, July 19, 2017 \u2013 Royal Academy of Engineering Sciences<\/strong><\/span><\/h2>\n

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  8:00 \u2013 8:30<\/h4>\n

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  \u201cPrecision Interplanetary Metagenomics\u201d<\/strong>
  \nDr. Christopher Mason, Associate Professor of Computational Biology at Weill Cornell Medicine; PI for MetaSUB New York City<\/em><\/h4>\n

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  8:30 \u2013 9:00<\/h4>\n

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  \u201cMapping the Urban Microbiome of New York City\u201d<\/strong>
  \nDr. Jane Carlton, Professor, Director, Center for Genomics and Systems Biology, New York University, USA<\/em><\/h4>\n

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  9:00 \u2013 9:30<\/h4>\n

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  \u201cBoeing Fly-Healthy Study\u201d<\/strong>
  \nDr. Howard Weiss, Professor of Mathematics, Georgia Tech, Atlanta, Georgia, USA<\/em><\/h4>\n

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  9:30 \u2013 10:00<\/h4>\n

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  Coffee and Tea Break<\/strong><\/h4>\n

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  10:00 \u2013 11:00<\/h4>\n

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  Thematic Session I (panel discussion): Metagenomics, Health Surveillance, and Antibiotic Resistance<\/strong><\/h4>\n

  \n
  • \n

    Dr. Gaston Gonnet, Professor of Computer Science at ETH Zurich and Institut Pasteur Montevideo, Montevideo, Uruguay<\/em><\/h4>\n<\/li>\n

    \n

    Dr. Lynn Schriml, Associate Professor of Epidemiology and Public Health at the Institute for Genome Sciences at University of Maryland School of Medicine, Baltimore, USA<\/em><\/h4>\n<\/li>\n

    \n

    Dr. Torsten Semmler, Assistant Professor at Robert Koch Institute, Berlin, Germany<\/em><\/h4>\n<\/li>\n

    \n

    Dr. Timothy Read, Professor of Infectious Diseases with Secondary Appointment in Human Genetics at Emory University School of Medicine, Atlanta, GA, USA<\/em><\/h4>\n<\/li>\n

    \n

    Dr. Velavan Thirumalaisamy, Professor of Infectious Diseases at the Institute for Tropical Medicine, Universit\u00e4tsklinikum T\u00fcbingen, T\u00fcbingen, Germany<\/em><\/h4>\n<\/li>\n<\/ul>\n

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    11:00 \u2013 11:30<\/h4>\n

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    Sponsored Talk by QIAGEN<\/strong><\/h4>\n

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    11:30 \u2013 12:00<\/h4>\n

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    CAMDA MetaSUB Challenge<\/strong>
    \nDr. Pawe\u0142 \u0141abaj, Assistant Professor at Boku University, Vienna, Austria<\/em><\/h4>\n

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    12:00 \u2013 13:00<\/h4>\n

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    Lunch<\/strong><\/h4>\n

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    13:00 \u2013 14:00<\/h4>\n

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    Thematic Session II (panel discussion): Advances in Bioinformatics and Data Visualization<\/strong><\/h4>\n

    \n
    • \n

      David Danko, PhD Candidate in computational biology at Weill Cornell Medicine<\/em><\/h4>\n<\/li>\n

      \n

      Dr. Pawel Labaj, Assistant Professor at Boku University, Vienna, Austria<\/em><\/h4>\n<\/li>\n

      \n

      Dr. Nicolas Rascovan, Post-Doctoral Fellow at Mediterranee Infection Institute \u2013 Aix Marseille University, Marseille, France<\/em><\/h4>\n<\/li>\n

      \n

      Dr. Hugues Richard, Assistant Professor in the Computational and Quantitative Biology Unit at University Pierre et Marie Curie, Paris, France<\/em><\/h4>\n<\/li>\n

      \n

      Dr. Dimitar Vassilev, Associate Professor of Computer Informatics at University of Sofia, Sofia, Bulgaria<\/em><\/h4>\n<\/li>\n

      \n

      Dr. Eran Elhaik, Professor University of Sheffield, U.K<\/em><\/h4>\n<\/li>\n<\/ul>\n

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      14:00 \u2013 14:30<\/h4>\n

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      Olympiome Updates<\/strong>
      \nDr. Emmanual Dias-Neto, Professor of medical genomics and bioinformatics at AC Camargo Center, Sao Paulo, Brazil<\/em><\/h4>\n

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      14:30 \u2013 15:00<\/h4>\n

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      Coffee and Tea Break (visit sponsors)<\/strong><\/h4>\n

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      15:00 \u2013 17:00<\/h4>\n

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      Lightening Round: City Updates<\/strong>
      \n15-minute talks on city updates and data analyses<\/h4>\n

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      17:00 \u2013 18:00<\/h4>\n

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      Data Dissemination and Access<\/strong><\/h4>\n

      \n
      • \n

        Demo of metagenscope and other tools<\/h4>\n<\/li>\n

        \n

        Ideas for new pipelines\/methods<\/h4>\n<\/li>\n

        \n

        SRA\/ENA\/Gates Open Access<\/h4>\n<\/li>\n<\/ul>\n

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        18:00 \u2013 18:40<\/h4>\n

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        Break, Sponsor Visits, and Networking<\/strong><\/h4>\n

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        19:00 \u2013 1:00<\/h4>\n

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        Visit to the Vasa Museum and dinner (Night at the Museum!)<\/strong><\/h4>\n

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        Thursday, July 20, 2017 – Stockholm University – open to the public<\/strong><\/span><\/h2>\n

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        8:00 \u2013 8:30<\/h4>\n

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        Coffee and Tea<\/strong><\/h4>\n

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        8:30 \u2013 9:30<\/h4>\n

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        Poster Session (highlighted posters below)<\/strong><\/h4>\n

        \n
        • \n

          Xinzhao Tong, \u201cIndividual factors and conditionally rare taxa shape the skin mycobiome dynamics over seasons\u201d<\/h4>\n<\/li>\n

          \n

          Dr. Aspa D. Chatziefthmiou, \u201cMicrobial community structure and inter-phyla interactions exhibit distinct patterns in desert marine mats\u201d<\/h4>\n<\/li>\n

          \n

          Andre Kahles, \u201cMetagenome Representation with Scalable Reference Graphs\u201d<\/h4>\n<\/li>\n

          \n

          Marcus Leung et al, \u201cComposition and dynamics of the air microbiome within a zero carbon building\u201d<\/h4>\n<\/li>\n<\/ul>\n

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          9:30 \u2013 10:00<\/h4>\n

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          \u201cPrecision Medicine and Standardization in Genomics and Bioinformatics\u201d<\/strong>
          \nDr. Leming Shi, Professor of Personalized Genomics, Fudan University, China; PI for MetaSUB Shanghai<\/em><\/h4>\n

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          10:00 \u2013 11:00<\/h4>\n

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          Thematic Session III (panel discussion): Air, Land, and Sea; Challenges in Metagenomics Standardization<\/strong><\/h4>\n

          \n
          • \n

            Daniela Bezdan, Research Director of Mason Lab for Integrative Genomics, Weill Cornell Medicine, New York City, USA<\/em><\/h4>\n<\/li>\n

            \n

            Dr. Aspa D. Chatziefthmiou, Research Scientist at Weill Cornell Medicine Doha and Founder of Richer Environments, Doha, Qatar<\/em><\/h4>\n<\/li>\n

            \n

            Dr. Patrick Lee, Assistant Professor in the School of Energy and Environment at the City University of Hong Kong, Hong Kong, China<\/em><\/h4>\n<\/li>\n

            \n

            Dr. Marius Dybwad, Research Scientist at the Norwegian Defense Research Establishment<\/em><\/h4>\n<\/li>\n

            \n

            Dr. Gaston Gonnet, Professor of Computer Science at ETH Zurich and Institut Pasteur Montevideo, Montevideo, Uruguay<\/em><\/h4>\n<\/li>\n

            \n

            Dr. Haruo Suzuki, Associate Professor, Institute for Advanced Biosciences, Keio University, Japan<\/em><\/h4>\n<\/li>\n<\/ul>\n

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            11:00 \u2013 12:00<\/h4>\n

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            Lunch<\/strong><\/h4>\n

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            12:00 \u2013 12:30<\/h4>\n

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            Sponsored Talk by Illumina<\/strong><\/h4>\n

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            12:30 \u2013 14:10<\/h4>\n

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            Highlighted Student Talks<\/strong><\/h4>\n

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            14:10 \u2013 14:40<\/h4>\n

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            Thematic Session IV (panel discussion): Metatranscriptomics and Viral RNA -Omics<\/strong><\/h4>\n

            \n
            • \n

              Dr. Emmanuel Dias-Neto, Assistant Professor of Genomics at AC Camargo Cancer Center, Sao Paulo, Brazil<\/em><\/h4>\n<\/li>\n

              \n

              Dr. Nicolas Rascovan, Post-Doctoral Fellow at Mediterranee Infection Institute \u2013 Aix Marseille University, Marseille, France<\/em><\/h4>\n<\/li>\n

              \n

              Dr. Christopher E. Mason, Associate Professor at Weill Cornell Medicine, New York City, USA<\/em><\/h4>\n<\/li>\n<\/ul>\n

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              14:40 \u2013 15:00<\/h4>\n

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              Coffee and Tea Break<\/strong><\/h4>\n

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              15:00 \u2013 15:15<\/h4>\n

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              Updates from The Second Annual Global City Sampling Day (GCSD 2017) and plans for gCSD18<\/strong>
              \nSofia Ahsanuddin, Executive Director of MetaSUB International Consortium<\/em><\/h4>\n

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              15:15 \u2013 15:45<\/h4>\n

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              H2020 Grant Thematic Session<\/strong><\/h4>\n

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              15:45 \u2013 17:00<\/h4>\n

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              Manuscript-planning and long-term goals to 2020<\/strong>
              \nDr. Christopher Mason, Associate Professor, Weill Cornell Medicine<\/em><\/h4>\n

              [\/vc_column_text][\/vc_column][\/vc_row]<\/p>\n<\/div>","protected":false},"excerpt":{"rendered":"

              [vc_row][vc_column][vc_single_image image=”5533″ img_size=”400 x 184.7″ alignment=”center” vc_none_hover_effect=””][\/vc_column][\/vc_row][vc_row][vc_column][vc_column_text] 3rd Annual Metagenomics and Metadesign of Subways and Urban Biomes (MetaSUB) Conference [\/vc_column_text][\/vc_column][\/vc_row][vc_row el_class=”title–indented”][vc_column offset=”vc_col-md-offset-2 vc_col-md-8″][vc_column_text] 18-19 July<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"folder":[144],"class_list":["post-5531","page","type-page","status-publish","hentry"],"yoast_head":"\n